Any good parser with Python??
1
0
Entering edit mode
7.1 years ago
lessismore ★ 1.4k

Hello people,

i am trying to find a good parser with python. Basically i would like to fetch fasta sequences from a genome fasta file using coordinates from gff file. Any suggestion is really welcomed. Thanks

python biopython gff fasta • 1.5k views
ADD COMMENT
0
Entering edit mode

If you can't write a python script to do this, or at least start one and if you get errors, post the code and error so someone can assist you, why are you asking for Python? I think @badribio's answer is a very good starting point for you for a CLI option.

ADD REPLY
1
Entering edit mode
ADD COMMENT

Login before adding your answer.

Traffic: 5563 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6