converting strange gene id to gene names

Question

[zizigolu]

Hi,

I was given two strange gene IDs coming from RNA-seq in chiness spring (wheat)

TRIAE_CS42_1AL_TGACv1_000363_AA0010190

TRIAE_CS42_1AL_TGACv1_000406_AA0011290

whatever I search I can't get they are belong to which gene names,

I tried this biostars forum but no clue Gene Id Conversion Tool

do you have any idea?

thank you

[GenoMax]

What is the assignment here? Just the conversion? Those may be some sort of transcript ID's and many not have actual annotation.

[zizigolu]

Thank you, I have a list of such a transcripts that should be converted to gene name, symbole, entrez, etc. but no DAVID neither another tools supported them.

[zizigolu]

you all right, they don't have clear annotation

https://www.ebi.ac.uk/gxa/genes/TRIAE_CS42_1AL_TGACv1_000363_AA0010190?bs=%7B%22triticum%20aestivum%22%3A%5B%22DEVELOPMENTAL_STAGE%22%5D%7D#information

[GenoMax]

Well unless you are willing to spend lots of time figuring out what each of those is, not much you may be able to do.

Answer 1

[Emily]

http://plants.ensembl.org/Triticum_aestivum/Gene/Summary?g=TRIAE_CS42_1AL_TGACv1_000363_AA0010190;r=TGACv1_scaffold_000363_1AL:55436-57946;t=TRIAE_CS42_1AL_TGACv1_000363_AA0010190.1;db=core

[zizigolu]

Thank you, how I can convert my list to UniProt ids?? because hereafter I would be able to perform GO classification on these validated ids, with these strange IDs no annotation tool gives GO terms.

[Emily]

With BioMart. Or you could bypass Uniprot and just get the GO terms from BioMart.