Question: Publication-Quality Multiple Sequence Alignment
0
gravatar for l.souza
21 months ago by
l.souza70
Brasilia, Brazil
l.souza70 wrote:

Hello everybody,

I run some alignments and I would like to generate great images from the ALN file. What can I use to make publication-quality images, preferably, with extra graphics.

ADD COMMENTlink modified 21 months ago • written 21 months ago by l.souza70
1

see Low Resolution Sequence Alignment Visualization

enter image description here

ADD REPLYlink written 21 months ago by Pierre Lindenbaum118k

Thank you, Pierre! But, does jvarkit show all the aas from the msa or just this bars?

ADD REPLYlink written 21 months ago by l.souza70

just this bar, sorry not suitable for "I mean graphics with the quality, the identity/similarity, etc..." :-)

ADD REPLYlink written 21 months ago by Pierre Lindenbaum118k
1
gravatar for l.souza
21 months ago by
l.souza70
Brasilia, Brazil
l.souza70 wrote:

I used ESPript 3.0 and JProfileGrid.

ADD COMMENTlink written 21 months ago by l.souza70
1
gravatar for h.mon
21 months ago by
h.mon24k
Brazil
h.mon24k wrote:

Try BoxShade. What do you mean by "extra graphics"?

edit: see also msa and prettyplot.

ADD COMMENTlink modified 21 months ago • written 21 months ago by h.mon24k

I mean graphics with the quality, the identity/similarity, etc...

ADD REPLYlink written 21 months ago by l.souza70
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