Question: Publication-Quality Multiple Sequence Alignment
0
gravatar for l.souza
3.3 years ago by
l.souza70
Brasilia, Brazil
l.souza70 wrote:

Hello everybody,

I run some alignments and I would like to generate great images from the ALN file. What can I use to make publication-quality images, preferably, with extra graphics.

ADD COMMENTlink modified 3.3 years ago • written 3.3 years ago by l.souza70
1

see Low Resolution Sequence Alignment Visualization

enter image description here

ADD REPLYlink written 3.3 years ago by Pierre Lindenbaum130k

Thank you, Pierre! But, does jvarkit show all the aas from the msa or just this bars?

ADD REPLYlink written 3.3 years ago by l.souza70

just this bar, sorry not suitable for "I mean graphics with the quality, the identity/similarity, etc..." :-)

ADD REPLYlink written 3.3 years ago by Pierre Lindenbaum130k
1
gravatar for l.souza
3.3 years ago by
l.souza70
Brasilia, Brazil
l.souza70 wrote:

I used ESPript 3.0 and JProfileGrid.

ADD COMMENTlink written 3.3 years ago by l.souza70
1
gravatar for h.mon
3.3 years ago by
h.mon31k
Brazil
h.mon31k wrote:

Try BoxShade. What do you mean by "extra graphics"?

edit: see also msa and prettyplot.

ADD COMMENTlink modified 3.3 years ago • written 3.3 years ago by h.mon31k

I mean graphics with the quality, the identity/similarity, etc...

ADD REPLYlink written 3.3 years ago by l.souza70

Anyway to let boxshade to show the result with colorful style? Thanks.

ADD REPLYlink written 9 months ago by Shicheng Guo8.3k
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