I am trying to build bowtie index, on Windows 10 using CygWin. Getting the following error when I run -
bowtie2-build myfile.fa index_file
Traceback (most recent call last): File "/usr/local/bin/bowtie2-build", line 95, in <module> main() File "/usr/local/bin/bowtie2-build", line 92, in main os.execv(build_bin_spec, argv) OSError: [Errno 8] Exec format error
Any ideas on how to fix it?
Thanks so much!
UPDATE: I tried using the prebuilt version of Bowtie2 as well. I get the same error.