I have a problem with downloading files from ensembl.
I am trying to download some files using rsync command.
I have a text file of all the paths for all the file.
The problem is that I can't extract them.
Here is my shell script:
#!/bin/bash while read line do echo $line rsync -av $line done < path.txt
while path.txt is this txt file:
rsync://ftp.ensembl.org/ensembl/pub/release-89/fasta/ailuropoda_melanoleuca/cdna/Ailuropoda_melanoleuca.ailMel1.cdna.all.fa.gz ./ rsync://ftp.ensembl.org/ensembl/pub/release-89/fasta/anas_platyrhynchos/cdna/Anas_platyrhynchos.BGI_duck_1.0.cdna.all.fa.gz ./
of course there are much more paths.
I did all this according to ensemble instructions: http://www.ensembl.org/info/data/ftp/rsync.html
For one path it works quite well....
The problem is for more than one file...
Using tar or gunzip did not help.
Can someone solve this problem?