Question: RNA-Seq in Bioconductor
1
gravatar for iza08.ik
2.4 years ago by
iza08.ik20
iza08.ik20 wrote:

Hello,

in which packages I can find data sets for RNA-Seq in edgeR, DESeq and others packages?

Could you recommend some data sets for beginners?

ADD COMMENTlink written 2.4 years ago by iza08.ik20
2

Have you red the DESeq2 manual? It is full of examples at the end. Each of them can be downloaded through R.

ADD REPLYlink written 2.4 years ago by VHahaut1.1k
1

Same goes for edgeR, normally they include an example that you can reproduce yourself in the manuals

ADD REPLYlink written 2.4 years ago by biofalconch410
2
gravatar for genomax
2.4 years ago by
genomax74k
United States
genomax74k wrote:

While DESeq2 includes a built-in data set for RNAseq (follow the guide here), you can find any number of real datasets in EBI-ENA or SRA.

ADD COMMENTlink modified 2.4 years ago • written 2.4 years ago by genomax74k
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