Question: Running Pindel individually per sample rather than running everything as it expects
gravatar for mehmetgoktay1989
13 months ago by
mehmetgoktay19890 wrote:

Hi Everyone,

I would like to identify SVs including indels, deletions, tandem duplications and inversions.

I have tried to run samples first individually and then all of them at once. (lets say 3-4 samples).

It definitely gives different results for these two approaches.

Is there anyone who can tell me what is the reason? And what would happen if I run all samples individually and merge the output for futher processing.

(Does this approach decrease false positives?) - Because it outputs the way less SVs.

Thank you!

pindel svs ngs • 332 views
ADD COMMENTlink written 13 months ago by mehmetgoktay19890
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 775 users visited in the last hour