Entering edit mode
6.9 years ago
salamandra
▴
550
Hi,
when running the script:
#!/bin/bash/
DIR=/path/FOS_45_DSG+Form/
IN=/path/macs_chipvsinput_FOS_day2_treat_qvalue.bdg
cd $DIR
bdgpeakcall -i $IN -c 2.995732274 -o score_HDF_day2
shows the error:
UnboundLocalError: local variable 'peak_content' referenced before assignment
Does anyone knows how to fix this? :)
I tried the command with macs2 before, but wasn't running...
I think you can use homer i used home for peak calling