Question: MACS2 bdgpeakcall gives UnboundLocalError: local variable 'peak_content' referenced before assignment:
1
gravatar for salamandra
5 weeks ago by
salamandra70
salamandra70 wrote:

Hi,

when running the script:

#!/bin/bash/
DIR=/path/FOS_45_DSG+Form/
IN=/path/macs_chipvsinput_FOS_day2_treat_qvalue.bdg
cd $DIR
bdgpeakcall -i $IN -c 2.995732274 -o score_HDF_day2

shows the error:

UnboundLocalError: local variable 'peak_content' referenced before assignment

Does anyone knows how to fix this? :)

chip-seq macs2 • 135 views
ADD COMMENTlink written 5 weeks ago by salamandra70
1

I tried the command with macs2 before, but wasn't running...

ADD REPLYlink written 5 weeks ago by salamandra70

I think you can use homer i used home for peak calling

ADD REPLYlink written 10 days ago by krushnach80150
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