Question: EggNOG 4.5 database
gravatar for rororo
11 months ago by
rororo0 wrote:

Can someone explain me why there are two eggNOG 4.5 databases for Bacteria? There is the precomputed HMM database for bactNOG and bact_50 available here:

hmm eggnog • 394 views
ADD COMMENTlink modified 11 months ago by jhc2.7k • written 11 months ago by rororo0
gravatar for jhc
11 months ago by
jhc2.7k wrote:

the databases bact_50 and bactNOG are not exactly the same. The first (bact_50) includes all bactNOG groups plus all OGs in children taxonomic levels for bactNOGs including more than 50 sequences (this is to increase HMM resolution in groups that are too large). Something similar occurs with euk vs eukNOG and arch.

ADD COMMENTlink written 11 months ago by jhc2.7k
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