Question: EggNOG 4.5 database
0
gravatar for tobias.v
9 weeks ago by
tobias.v0
tobias.v0 wrote:

Can someone explain me why there are two eggNOG 4.5 databases for Bacteria? There is the precomputed HMM database for bactNOG and bact_50 available here: http://eggnogdb.embl.de/download/eggnog_4.5/hmmdb_levels/

hmm eggnog • 150 views
ADD COMMENTlink modified 9 weeks ago by jhc2.5k • written 9 weeks ago by tobias.v0
0
gravatar for jhc
9 weeks ago by
jhc2.5k
Germany
jhc2.5k wrote:

the databases bact_50 and bactNOG are not exactly the same. The first (bact_50) includes all bactNOG groups plus all OGs in children taxonomic levels for bactNOGs including more than 50 sequences (this is to increase HMM resolution in groups that are too large). Something similar occurs with euk vs eukNOG and arch.

ADD COMMENTlink written 9 weeks ago by jhc2.5k
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