Question: Extract motif ids of all transcription factors in human
0
gravatar for anshupa.vssut
3.0 years ago by
Germany
anshupa.vssut50 wrote:

Hello all,

I wish to extract the motif ids of all transcription factors occurring in humans from JASPAR 2016. Is anyone aware of how to achieve this?

ADD COMMENTlink modified 2.6 years ago by asntech50 • written 3.0 years ago by anshupa.vssut50
2
gravatar for asntech
2.6 years ago by
asntech50
Norway/Oslo
asntech50 wrote:

Hi, JASPAR now provide a REST API to get data from the latest release (2018) and also older releases of JASPAR. Here is the API http://jaspar.genereg.net/api/ and here is an interactive documentation http://jaspar.genereg.net/api/v1/docs

You can also access JASPAR 2018 database by using R/Bioconductor package https http://bioconductor.org/packages/JASPAR2018/

P.S. Although, it is a late answer, but I'm posting this if someone else have similar questions.

ADD COMMENTlink written 2.6 years ago by asntech50
1
gravatar for Biojl
3.0 years ago by
Biojl1.7k
Barcelona
Biojl1.7k wrote:

You can programatically access the JASPAR 2016 database using this R package: https://bioconductor.org/packages/release/data/experiment/html/JASPAR2016.html

ADD COMMENTlink written 3.0 years ago by Biojl1.7k
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