Question: Using cnvkit for targeted amplicon sequencing
gravatar for ingrid.schulman
2 days ago by
ingrid.schulman0 wrote:

Hi, I'm trying to use cnvkit python package to calculate copy numbers for targeted amplicon sequenced data. I have cancer samples and normal samples and would like to do a paired reference, is this possible to do with cnvkit and how do I do it? In the documentation I only find examples for TAS without the usage of normal samples.

example: reference *.targetcoverage.cnn --no-edge -o ref-tas.cnn

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