Entering edit mode
6.8 years ago
l.souza
▴
80
What is the fastest way of infering phylogeny by Maximum Likelihood with bootstrap? I tried to use PAUP* 4.0, but making some calculations, it would take more than a week...
The alignment has 50 sequences of ~7000 nt each.
Did you give a try to RAxML already?
I tried RAxML on the CIPRES server. The job was killed after 10 hours running.