Question: Integrate Several Microarray and RNA-Seq Datasets
gravatar for lessismore
2.0 years ago by
lessismore630 wrote:

Although this topic has been discussed in the past in several other occasions, i am curious to know your current opinion about that. Several methods have been proposed and i would know from you how you would deal with combining several microarray and RNA-seq experiments for whatever purpose (DE-analyses, Gene Regulatory Networks, etc..), thus how would you address problems as removing batch effects and transform/normalize the data before processing it.

If you can please cite some relevant paper on that.

Thanks in advance

( 1. Combining Gene Expression Microarray Datasets 2. workflow for combining multiple microarray studies of same platform 3. 4. Combining Microarray and RNAseq data 5. methods of integrating microarray data and RNAseq data 6. Is it possible to combine micro array data and RNA-Seq data and perform meta analysis for differential gene expression analysis. 7. Combined Rnaseq + Microarray Transcriptomics Datasets 8. Integrating Different Data Types To Infer Gene Regulatory Networks 9. )

ADD COMMENTlink modified 2.0 years ago by theobroma221.1k • written 2.0 years ago by lessismore630
gravatar for theobroma22
2.0 years ago by
theobroma221.1k wrote:

Ultimately, you have to determine the best method by doing all available methods, and use the one that had the best result.

ADD COMMENTlink written 2.0 years ago by theobroma221.1k
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