How to create the taxonomy file for RDP Classifier?
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6.8 years ago

The RDP classifier requires a custom taxid file if the user has to train the classifier with a custom database. I would greatly appreciate if anyone can share instructions on how to make such a file using the sequence annotations in the FASTA file. For reference, it looks something like this :

0*Root*-1*0*rootrank
1*k__Archaea*0*1*domain
2*p__Crenarchaeota*1*2*phylum
3*c__Thermoprotei*2*3*class
4*o__Acidilobales*3*4*order
5*f__Acidilobaceae*4*5*family
6*g__Acidilobus*5*6*genus

Thanks

rdp classification • 1.8k views
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I want the same, probaly need to make my own script. But sugestions of other people are welcome

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