Question: how investigate genes after meta-analysis in each experiment
0
gravatar for Edalat
3.4 years ago by
Edalat30
Edalat30 wrote:

hello everyone,

after meta-analysis I want to investigate genes in each experiment,for example I want to know "gene1" that is up-regulated gene in meta-analysis, is up-regulate in each experiment too or not.what should I do? I should determine DEG in each experiment and compare? I should say that I am using noiseq metaseq package, and I can determine DEG by DEseq2.

ADD COMMENTlink modified 3.4 years ago by Biostar ♦♦ 20 • written 3.4 years ago by Edalat30

Can you elaborate on what a "meta-analysis" is in your question? It's a broad and flexible term, quite often misused.

ADD REPLYlink written 3.4 years ago by WouterDeCoster44k

I want to Check out effect of a drug on a cancer of several RNA-seq data.is it enough?

ADD REPLYlink written 3.4 years ago by Edalat30
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