Deal all Has anyone used the STRING database for retrieving bacterial strains's protein protein interactions. I have all the identifiers list (mentioned below) and I need to retrieve their interacting partners with the information and annotation of gene neighborhood, gene fusion, co-occurences along with their scores. 575584.HMPREF0010_01182 575584.HMPREF0010_02823 575584.HMPREF0010_03718 575584.HMPREF0010_02943 575584.HMPREF0010_01100 575584.HMPREF0010_00178 575584.HMPREF0010_02785 575584.HMPREF0010_01244 and so on ... while using API for this purpose I am using http://string-db.org/api/image/network?identifier=575584.HMPREF0010_01885, but it doesnt show any information for gene neighborhood and fusion and nothing has been mentioned in the tutorial. As I have 2500 entries like this, can anyone tell me how can I retrieve it pragmatically by using these identifiers... Please do the needful..
Question: Retrieving protein protein interaction database using STRING database
21 months ago by
sharmatina189059 • 30
sharmatina189059 • 30 wrote:
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