Question: Script to run on linux for assembly on clusters
gravatar for dhiren
17 months ago by
dhiren0 wrote:


What Script do i run for abyss to do an assembly on multiple machines? I have installed DIDA so i can can so an assembly on a cluster but im not sure how to call it in the script. I am using a linux machine


assembly cluster • 477 views
ADD COMMENTlink modified 17 months ago by Dan Gaston7.1k • written 17 months ago by dhiren0
gravatar for Dan Gaston
17 months ago by
Dan Gaston7.1k
Dan Gaston7.1k wrote:

Well, it partially depends on your cluster. Since you have DIDA installed, the abyss command itself has a dida subcommand you can use as per the manual and documentation. There does appear to be an abyss-dida wrapper script (abyss-dida on github) but I'm not sure exactly how it is used as I haven't used this approach before. But in general, you probably have some things to do or set up depending on what scheduler the cluster uses. You should speak to whoever runs your cluster.

ADD COMMENTlink written 17 months ago by Dan Gaston7.1k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 941 users visited in the last hour