Question: Script to run on linux for assembly on clusters
0
gravatar for dhiren
5 months ago by
dhiren0
dhiren0 wrote:

Hi

What Script do i run for abyss to do an assembly on multiple machines? I have installed DIDA so i can can so an assembly on a cluster but im not sure how to call it in the script. I am using a linux machine

Regards

assembly cluster • 253 views
ADD COMMENTlink modified 5 months ago by Dan Gaston6.9k • written 5 months ago by dhiren0
0
gravatar for Dan Gaston
5 months ago by
Dan Gaston6.9k
Canada
Dan Gaston6.9k wrote:

Well, it partially depends on your cluster. Since you have DIDA installed, the abyss command itself has a dida subcommand you can use as per the manual and documentation. There does appear to be an abyss-dida wrapper script (abyss-dida on github) but I'm not sure exactly how it is used as I haven't used this approach before. But in general, you probably have some things to do or set up depending on what scheduler the cluster uses. You should speak to whoever runs your cluster.

ADD COMMENTlink written 5 months ago by Dan Gaston6.9k
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