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4.9 years ago
jacobnix • 0

when I run the pacbio smrtlink everyhing works well but in the following phase the process failed , the stderr message is :

The entries you tried to add are out of order, precede already added entries, or otherwise use illegal values.
Please correct this and try again.


if you have experience with pacbio , the error message do you know what means ? my data ?

[ERROR] 2017-05-27 01:30:49,610Z [pbsmrtpipe.tools.runner run_task 274] Failed task pbcoretools.tasks.gather_bigwig exit code 2 in 17.12 sec (See file '/opt/pacbio/smrtlink/userdata/jobs_root/000/000017/tasks/pbcoretools.tasks.gather_bigwig-1/stderr'.)
Extracted from stderr
The entries you tried to add are out of order, precede already added entries, or otherwise use illegal values.
Please correct this and try again.

Traceback (most recent call last):
return_code = exe_main_func(*args, **kwargs)
_ = func(chunked_files, output_file, **kwargs)

RuntimeError: The entries you tried to add are out of order, precede already added entries, or otherwise use illegal values.
Please correct this and try again.


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Hello WouterDeCoster , sorry ,

I will keep it in mind

thank you !! :D