Kallisto Pseudobam - Conversion to Genomic Coordinates
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4.9 years ago
ATpoint 60k

Hello,

I produced some pseudobams with kallisto (RefSeq transcripts as reference) and would like to display them in the IGV. The pseudobam of course does not contain genomic coordinates, but only the relative position of the read within the reference transcript. Before I now start writing code to convert these relative positions to hg38 coordinates, maybe somebody has still done that, or even some tools that I missed can do it?

kallisto pseudobam • 1.8k views
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