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6.8 years ago
bandanaschapagain
▴
30
Hi, I used Lowfreq to get the Single Nuclwotide Polymorphism (SNPs) for my plant viral dataset with this command: lofreq call -f ref.fa -o vars.vcf aln.bam I reviewed Biostar, Lowfreq FAQ to understand the output. I am not able to have a clear picture of it. I hope to get some informations over this. Regards, Bandana
I really could not figure it out about the output. If only anyone can help me.