Galaxy workflow queue

Question

[louis.gil007]

Im using varScan2-somatic. I'm inputing 2 bam files1 for tumor and 1 for cancer. I need to do this comparison multiple times on different files. I can't find a way to make a queue such that Im not running all the files at the same time

I would like to do a comparison, output, then repeat until I have no files left. I need a queue

[Devon Ryan]

1. I assume you have tumor-normal pairs, yes? That is, you don't have a single normal that you want all of the tumor samples compared against.
2. Please post this to the galaxy version of this site instead. It'd be really nice convert this tool to accept nested dataset collections for cases like yours, but I don't know if that's been done yet.
3. In the unlikely case that you're worried about running too much at once, note that Galaxy will limit how many jobs you can run at once already.