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6.8 years ago
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Hello,
I've tried generating a dendrogram of my single cell data after running an analysis but everything is squished together. Does anyone know how to make it wider.
This is the code im using at the moment. Any suggestions to modify it would be very well appreciated. thanks
plot(hclust(as.dist(1-cor(ed))))
You need to provide more information. What are you trying to plot with (it looks like R?). Have you considered using a dedicated plotting tool/library?
Generally if you have a tree with that many leaves you'll simply never be able to plot it in a way that is clear and also displays all the data. You will probably have to collapse nodes, plot without tip labels and so on.