Hi everybody, following the next code
vsd <- varianceStabilizingTransformation(dds, blind = TRUE) vst <- assay(vsd) dds2 <- DESeq(dds) res2 <- results(dds2) mat <- assay(vsd)[head(order(res.05$padj), 300), ] write.table(mat, "heatmap_matrix")
I was wondering if in the final matrix (heatmap_matrix) the values are fold change or counts. Does anyone know about it?
Many many thanks!