Off topic:Running multiple read-pairs with Trinity on Galaxy
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3.8 years ago
rrcutler ▴ 120

Hello fellow Galaxy users,

I am trying to use Trinity to assemble NGS reads from 9 samples that each have paired-end reads. However, I am unable to load multiple Left and Right reads so that all 18 of the fastq files can be run together. I see that input can be of 3 types: single dataset, multiple datasets (batch), and dataset collection. I think what I would want to be using is dataset collection to input the 8 Left and 8 Right reads. My problem is that I have "no dataset collection available", despite uploading the fastq files through the collection tab in the upload window (collection type: list). Any experience with this?

Here is a visual of my problem: enter image description here

RNA-Seq Assembly • 1.5k views
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