Question: STAR/StringTie compatibility on tag HI in the BAM alignment file
0
gravatar for Megan
23 months ago by
Megan40
Megan40 wrote:

Hi, I am trying to do transcript reconstruction and quantification using StringTie on BAMs generated by STAR. According to https://ccb.jhu.edu/software/stringtie/#install, modifying the tag HI in the BAM alignment file to start at 0 (as previously required with STAR produced alignment files) is no longer needed starting at v1.1.0 release 10/19/2015. I came across this after having generated BAMs using STAR with --outSAMattrIHstart 0 option. And StringTie finished successfully using the BAMs generated by STAR. I'm really concerned if there are any underlying mistakes doing so. Thanks!

star stringtie • 939 views
ADD COMMENTlink written 23 months ago by Megan40
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 648 users visited in the last hour