Question: Free Alternative of Biedit in Linux / OSX
0
gravatar for danangcrysnanto
2.9 years ago by
danangcrysnanto0 wrote:

Hi!

Does anybody know tools that can do multiple sequence alignment of nucleotide as amino acid. I can do that easily on Bioedit, but could not find any (free) tools that can do that in Linux or OSX. I know that Geneious can do that but it is not free. I tried Aliview, but not as straightforward as Bioedit.

Regards

Danang

alignment • 2.5k views
ADD COMMENTlink modified 2.9 years ago by h.mon29k • written 2.9 years ago by danangcrysnanto0
1

but could not find any (free) tools that can do that in Linux or OSX.

What have you tried to find those alternative? Please google "free alternatives to Bioedit". Practically all relevant MSA (clustalW, Muscle, MAFFT) tools are open source.

ADD REPLYlink modified 2.9 years ago • written 2.9 years ago by Michael Dondrup47k

Jalview would be another free option.

ADD REPLYlink written 2.9 years ago by genomax83k
0
gravatar for h.mon
2.9 years ago by
h.mon29k
Brazil
h.mon29k wrote:

BioEdit does not, in fact, do multiple sequence alignment: it uses external tools to do this.

SeaView is a (much simpler) linux, macosx and windows alternative to BioEdit. Like BioEdit, it wraps external programs to perform alignment (clustalo and muscle, if memory serves me right) and phylogeny estimation.

ADD COMMENTlink modified 2.9 years ago • written 2.9 years ago by h.mon29k
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