Question: SIGNATURE MATRIX IN CIBERSORT
2
gravatar for pierangela.bruno
3.5 years ago by
pierangela.bruno20 wrote:

Does anyone know of other cell type signatures besides LM22 from CIBERSORT? I am working with CIBERSORT but I have a lots problems due to different probes from mixture w.r.t. LM22. I mean LM22 takes care and find out cell lines like B cells naive, B cells memory, Plasma cells, T cells CD8, T cells CD4 naive. I am working with a mixtures dataset composed by cell lines like FFA-ABC-E6, FFA-ABC-C6, FFA-GCB-A6 FFA-GCB-D2. How can I use CIBERSORT? How can I generate new signature matrix or manipulate LM22 in order to make it fit to my problem and analysis? I found this error when I am trying to run CIBERSORT: No overlap in genes between the mixture and signature genes files found. Thank you for your disponibility

rna-seq gene software error • 2.9k views
ADD COMMENTlink modified 6 weeks ago by dare_devil610 • written 3.5 years ago by pierangela.bruno20
0
gravatar for dare_devil
6 weeks ago by
dare_devil610
India
dare_devil610 wrote:

Go through this paper . They mention about creating custom signature matrix

ADD COMMENTlink written 6 weeks ago by dare_devil610
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