I have recently downloaded Megahit and would like to have a try on it.
I have simply enter the following command:
./megahit -r ./example/refExample.fa --k-max 99 --k-min 11
Which I would try to use the example given by Megahit with k-mer of maximum 99 and minimum of 11 to see if it works. However, the returns is as follow:
Traceback (most recent call last):
File "./megahit", line 1143, in module>
File "./megahit", line 1067, in main
File "./megahit", line 526, in
ValueError: invalid literal for int() with base 10: ''
The system base I am using is Window 64bit with cygwin64. I am having python version 2.7.13 from cygwin.
I have tried to search on google and else where, but the results mostly shown are saying that I am defining the variable wrongly.
However, I do no think it is a good way to modify the script by myself as I have no idea on python coding...
Do anyone else have the same experience on this when using Megahit?
Thanks a lot!