Question: Use kallisto with ONT (nanopore) cDNA long reads
2.6 years ago by
Nicolas Rosewick ♦ 8.6k
Nicolas Rosewick ♦ 8.6k wrote:
I've some cDNA sequences from an nanopore experience. In my knowledge there is not yet splice-aware aligner for such type of data. Thus is it possible to use kallisto to infer the TPM and estimate read count for each cDNA sequence ?
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