Question: (Closed) RSQLite reverse dependencies
0
gravatar for biostR
2.1 years ago by
biostR0
biostR0 wrote:

Hi,

This is the first time I am asking a question online. I could not find a way for solving this.

I updated R to the latest version. When I tried to use latest version of affycoretools package an error message told me that I should use an updated version of RSQLite:

"...namespace ‘RSQLite’ 1.1-2 is already loaded, but >= 2.0 is required.."

Then I upgraded RSQlite to the latest version. This time affycoretools and some other packages complain and cease to work because the latest version of RSQLite does not have dbgetquery() function which many reverse-dependent packages require.

Do you have any suggestions?

Thanks a lot.

R • 672 views
ADD COMMENTlink modified 23 months ago by Biostar ♦♦ 20 • written 2.1 years ago by biostR0
1

Hi biostR,

I think bioconductor support might be a better place to ask this question, but make sure to mention you also crossposted to Biostars. As such people don't spend too much effort in answering a question which already received an answer elsewhere.

Make sure to be more specific about this:

This time affycoretools and some other packages complain and cease to work because the latest version of RSQLite does not have dbgetquery() function which many reverse-dependent packages require.

Cheers,
Wouter

ADD REPLYlink written 2.1 years ago by WouterDeCoster40k

Hello biostR!

We believe that this post does not fit the main topic of this site.

Please post this question over at Bioconductor support. Make sure to copy all the relevant error messages and commands verbatimly and especially the output of sessionInfo()

For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.

If you disagree please tell us why in a reply below, we'll be happy to talk about it.

Cheers!

ADD REPLYlink modified 23 months ago • written 23 months ago by Michael Dondrup46k
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