hey! So I'm unsure of what the following means:
ubuntu@ubuntu-xenial:/vagrant/denovo$ ./minia-v2.0.7-bin-Linux/bin/minia -in minia-v2.0.7-bin-Linux/test_data/P4-P1S_12.fastq -kmer-size 31 -abundance-min 3 -out P4-P1S
[DSK: Collecting stats on P4-P1S_12 ] 100 % elapsed: 0 min 9 sec estimated remaining: 0 min 0 sec cpu: 88.2 % mem: [ 11, 11, 11] MB
[DSK: nb solid kmers found : 1467480 ] 108 % elapsed: 0 min 47 sec estimated remaining: 0 min 0 sec cpu: 86.7 % mem: [ 36, 114, 114] MB
WARNING: Error unlinking temporary file mphf.temp.Xi3OR8
WARNING: Error unlinking temporary file mphf.temp.XQvJoL
Segmentation fault (core dumped)
The output when I ls the dir:
ubuntu@ubuntu-xenial:/vagrant/denovo$ ls
trashme_25135_dsk_partitions.parts.1 trashme_25135_dsk_partitions.parts.15 trashme_25135_dsk_partitions.parts.20 trashme_25135_dsk_partitions.parts.26 trashme_25135_dsk_partitions.parts.4
minia-v2.0.7-bin-Linux trashme_25135_dsk_partitions.parts.10 trashme_25135_dsk_partitions.parts.16 trashme_25135_dsk_partitions.parts.21 trashme_25135_dsk_partitions.parts.27 trashme_25135_dsk_partitions.parts.5
mphf.temp.Xi3OR8 trashme_25135_dsk_partitions.parts.11 trashme_25135_dsk_partitions.parts.17 trashme_25135_dsk_partitions.parts.22 trashme_25135_dsk_partitions.parts.28 trashme_25135_dsk_partitions.parts.6
mphf.temp.XQvJoL trashme_25135_dsk_partitions.parts.12 trashme_25135_dsk_partitions.parts.18 trashme_25135_dsk_partitions.parts.23 trashme_25135_dsk_partitions.parts.29 trashme_25135_dsk_partitions.parts.7
P4-P1S.h5 trashme_25135_dsk_partitions.parts.13 trashme_25135_dsk_partitions.parts.19 trashme_25135_dsk_partitions.parts.24 trashme_25135_dsk_partitions.parts.3 trashme_25135_dsk_partitions.parts.8
trashme_25135_dsk_partitions.parts.0 trashme_25135_dsk_partitions.parts.14 trashme_25135_dsk_partitions.parts.2 trashme_25135_dsk_partitions.parts.25 trashme_25135_dsk_partitions.parts.30 trashme_25135_dsk_partitions.parts.9
So lots of trashme files, mphf.temp.Xi30R8, mphf.temp.XQvJoL and P4-P1S.h5
UPDATE: I have fiddled with kmer size and converted from fastq to fasta and I get the same error each time.
I'm running on an Ubuntu VM. I'm sure I'm missing something obvious and I searched biostars and didn't find something similar.
Thanks!