Hi! We are planning some GBS sequencing experiment. We have the whole genome sequence of organism of interest. But we'd like to test in silico numerous restriction enzymes to choose the best one for our experiment. I wondering, is there any ready program to do that? Particularly, count number of restriction sites in the genome for one or two different enzymes, make distribution of restriction fragment lengths etc. Thanks!
Question: Software to in silico test restriction enzymes for GBS sequencing and similar approaches
1
Denis • 200 wrote:
2
h.mon ♦ 32k wrote:
Apparently, there are several, see these threads:
Q: In Silico Genome Digestion ?
Q: Restriction Sites Fragments For Gbs/Ddrad
Also, see these papers:
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