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• Evaluate genome annotation quality
  If I have multiple annotations (gff/gtf files) for a genome, are there tools/metrics to evaluate ...
• How Do I Annotate Multiple *.Gvf Files At Once Using Vaast - Vat?
  How to annotate multiple .gvf files at once using VAAST - VAT. (*.gvf -> *.vat.gvf)
• how to display multiple row annotations on pheatmap
  I am interested in adding multiple row annotations to my heatmap using the pheatmap function in R...
• How to generate a multiple sequence alignment that retains the annotations from the original sequences?
  I want to generate a multiple sequence alignment that retains the annotations I made on a list of...
• Annotate Multiple Alignment (Clustalw)
  Hi, Is there a tool to visualize a multiple alignment produced by clustalw2 with an annotation f...
• Adding annotation tracks for multiple alignment
  Is there a software to add annotation to multiple alignments? I have a file from clustalw/muscl...
• multiple genome alignments with gene annotations
  Hi Folks, I am looking for some online tools with this function: multiple genome sequence alignm...
• Problems while annotating with snpEFF
  Hi I am trying to annotate the variants in a vcf file using snpEFF, but its giving multiple annot...
• How To Merge Multiple Annotated Artemis Files?
  I am annotating a bacteria genome in separate Artemis files. Is it possible to merge all these an...
• How To Distinguish Genuine Duplication From Sequencing-Annotation Artifact?
  I am working on the genomics of a model organism that has multiple copies for many important gene...
• annotating Multiple Phylogenetic trees on the basis of color
  Hello everyone, I have multiple phylogenetic trees (more than 5000) in newick format and I want ...
• Why one genbank entry has multiple CDS?
  Dear all I am confused regrading prokaryotes genome annotation that how one gene for example GenB...
• Microarray Gene Annotation
  Hi everyone, I know the concept of multiple probe ids matching to single gene but, Is it possible...
• How To Handle The Case A Affymetrix Probe Set Id Mapped To Multiple Genes?
  Dear all, In the Affymetrix annotation file, I find that some probe set ID are mapped to multipl...
• How To Make Multiple Lines Annotation In R, Bash
  It is annoying to add "#" one line by one line. I am looking some commands like =pod =cut in perl.
• Affymetrix Probes and Multiple Alignments
  I am looking at annotation information for the HG-U133A 2.0 human microarray. Probe information c...
• Using Gencode annotation with cufflinks
  Hello, I am experimenting with the latest Gencode human annotation releases (v20 and v21) with m...
• How To Convert Geo Dataset With Multiple Platforms Into Expression Set With Annotation To Entrez Id?
  How can I convert the GSE121 that have multiple platform GPL80, GPL98, GPL99, GPL100, GPL101 into...
• an efficient way to annotate mutations from vcf files using multiple annotation files
  we do whole exome sequencing at our lab since years, and we already have an established bioinform...
• Functional Annotation Clustering With Multiple Backgrounds
  Hello, I am looking to perform a Functional Annotation Clustering similar to what is offered in ...