Another newbie question I'm afraid...... I was informed that my bam file was generated against 'Human Genome Reference 38' (is this GRCh38) yet in my bam file header I see what appears to be a mapping against 'hg19'.
@PG ID:rtg-49A3938E VN:RTG Core 3.6.1 / Core 891de81 (2016-01-25) CL:map -t /opt/annai/levobox/ref/hg19.sdf -i /tmp/box4jh2n06g/reads.sdf -o /tmp0/boxyyljj8_l/map_412857990_495429577 --start-read 412857990 --end-read 495429578 PN:rtg
Is hg19 the same as Human Genome Reference 38 (is this GRCh38?). A bit confused as I have seen it directly linked to GRCh37.
Hope you can help. Thank you.