Phylogenetic Software used for detecting defective taxa and flat sequences in multiple sequences alignment foe enhancing bootstrap value

Question

[rathershabir100]

Hello

This is Shabir from India working on the Phylogeny of Crotalaria. I would like to request that could you please tell me the recent Phylogenetic software which can detect defective taxa in multiple sequence alignment and flat sequences. I shall be highly grateful to you

Thanking you