Question: AnnotationDbi using UCSC annotation
gravatar for jadepinket
3.0 years ago by
jadepinket10 wrote:

Below is the error I get, any suggestions would be helpful

res$symbol <- mapIds(TxDb.Hsapiens.UCSC.hg38.knownGene, keys=row.names(res), column="CDSNAME", keytype="TXID", multiVals="first")

Error in .testForValidKeys(x, keys, keytype, fks) : None of the keys entered are valid keys for 'TXID'. Please use the keys method to see a listing of valid arguments.

ucsc rna-seq annotationdbi • 1.2k views
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