[DESeq2] Time-Course Experimental design
0
0
Entering edit mode
3.7 years ago
inzirio • 0

I'd like to perform an experimental design for DESeq2 package using the LRT Test.

I've already done it before using two different conditions Treated (T) vs Untreated (U), each at different time points.

I was wondering how to design an experiment having the U replicates just at time point 0 and T replicated samples at different time-points.

Is it possible to perform it with DESeq2? I'm not able to find examples as in this special case, but i'm able to find several time-course data designed in this way.

Thanks, Inzirio

RNA-Seq R time-course • 1.7k views
ADD COMMENT
0
Entering edit mode
ADD REPLY
0
Entering edit mode

Hello mioappoggio!

It appears that your post has been cross-posted to another site: https://support.bioconductor.org/p/98424/ (and answered there)

This is typically not recommended as it runs the risk of annoying people in both communities.

ADD REPLY

Login before adding your answer.

Traffic: 2428 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6