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Comment: Integration of transcriptomics and proteomics: difficult matching names
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I can see this in the list
GI:2387631 Nup42 O Gene nucleoporin 42 10.72 5 24369961 24389011 + AA867018|AB067574|AI426644|AK077066|AK07…
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Sorry, I misunderstood. Thank you so much for this.
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Hello,
This conversion tool has been useful to me, maybe it can help you:
https://biit.cs.ut.ee/gprofiler/convert
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Perhaps eggNOG-MAPPER can be useful for functional annotation:
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I suggest searching for the difference between structural annotation (identifying the coordinates of the ORFs in a sequence) and functional…
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looks good but I cannot find either Nupl2 nor Nup42 in the list!
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This table from Jackson labs that correlates many mouse identifiers with external databases will help. Look at the headers of the columns t…
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I just gave hint in the comment above. Please try this, it should work for you.
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I also have this exact same question. I have my entire genome annotated and a braker.GTF file, but without protein "product" names.
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Can you show us the output from VEP and snpEff? They could be annotating two different transcripts.
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Honestly, any popular aligner will do: STAR, bowtie2, bwa, etc. Just make a FASTA file containing your sequences of interest, build an inde…
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