There are some empty Scaffolds in genome assembly (ID known), how I can remove them.

Question

[mujahid.ali]

HI I have a genome assembly of fasta formate , there are some empty Scaffolds in it (ID are known), how I can remove them. please help.

thanks

Answer 1

[GenoMax]

If the ID's are known then use the solution in this thread: How to remove sequences from a fasta file based on ID list?

[mujahid.ali]

thanks !!! this pipeline worked > ./faSomeRecords -exclude your_original.fa id_to_exclude final.fa