Question: Extracting protein sequences of enzymes for specific pathways from KEGG
0
gravatar for shaierev
2.6 years ago by
shaierev0
shaierev0 wrote:

Hello! How do I retrieve a fasta/txt file from KEGG including protein sequences of enzymes for all enzymes involved in a specific pathway? Thank you!

blast kegg alignment • 891 views
ADD COMMENTlink modified 2.6 years ago by Pallab Bhowmick20 • written 2.6 years ago by shaierev0
1

KEGG REST Api may be able to do this. Give that a look.

ADD REPLYlink written 2.6 years ago by genomax78k
0
gravatar for Pallab Bhowmick
2.6 years ago by
Canada
Pallab Bhowmick20 wrote:

I don't know there is any tool exist to do that but if you can write your own program (python) then you will able to do that. When you open KEGG pathway (show pathway option), you can scrap that HTML page and you will find the link for every enzyme associated with that particular pathway. From that link, you can get FASTA sequence of your enzyme.

ADD COMMENTlink written 2.6 years ago by Pallab Bhowmick20
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