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Question: Extracting protein sequences of enzymes for specific pathways from KEGG
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gravatar for shaierev
2.6 years ago by
shaierev • 0
shaierev • 0 wrote:

Hello! How do I retrieve a fasta/txt file from KEGG including protein sequences of enzymes for all enzymes involved in a specific pathway? Thank you!
blast kegg alignment • 891 views
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modified 2.6 years ago by Pallab Bhowmick • 20 • written 2.6 years ago by shaierev • 0
1

KEGG REST Api may be able to do this. Give that a look.

ADD REPLY • link written 2.6 years ago by genomax ♦ 78k
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gravatar for Pallab Bhowmick
2.6 years ago by
Pallab Bhowmick • 20
Canada
Pallab Bhowmick • 20 wrote:

I don't know there is any tool exist to do that but if you can write your own program (python) then you will able to do that. When you open KEGG pathway (show pathway option), you can scrap that HTML page and you will find the link for every enzyme associated with that particular pathway. From that link, you can get FASTA sequence of your enzyme.
ADD COMMENT • link written 2.6 years ago by Pallab Bhowmick • 20
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