Question: BWA aln vs. mem for 100bp reads
0
gravatar for ropolocan
2.7 years ago by
ropolocan640
Canada
ropolocan640 wrote:

Hello everyone,

Which BWA algorithm is a better choice for aligning 100 bp Illumina reads? BWA aln or BWA mem? I have read that BWA mem is usually faster, and more accurate, but what is BWA aln useful for then? Thanks.

bwa • 1.8k views
ADD COMMENTlink modified 2.7 years ago by Pierre Lindenbaum127k • written 2.7 years ago by ropolocan640
4
gravatar for genomax
2.7 years ago by
genomax80k
United States
genomax80k wrote:

When and why is bwa aln better then bwa mem?
and BWA-MEM Vs BWA-ALN (check blog link in @Goutham's comment)

ADD COMMENTlink modified 2.7 years ago • written 2.7 years ago by genomax80k

Thank you so much, @genomax!

ADD REPLYlink modified 15 months ago • written 2.7 years ago by ropolocan640
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