Question: BWA aln vs. mem for 100bp reads
0
gravatar for ropolocan
4 months ago by
ropolocan330
Canada
ropolocan330 wrote:

Hello everyone,

Which BWA algorithm is a better choice for aligning 100 bp Illumina reads? BWA aln or BWA mem? I have read that BWA mem is usually faster, and more accurate, but what is BWA aln useful for then? Thanks.

bwa • 379 views
ADD COMMENTlink modified 4 months ago by Pierre Lindenbaum102k • written 4 months ago by ropolocan330
3
gravatar for genomax
4 months ago by
genomax39k
United States
genomax39k wrote:

When and why is bwa aln better then bwa mem?
and BWA-MEM Vs BWA-ALN (check blog link in @Goutham's comment)

ADD COMMENTlink modified 4 months ago • written 4 months ago by genomax39k

Thank you so much, @genomoax!

ADD REPLYlink written 4 months ago by ropolocan330
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1094 users visited in the last hour