Question: BWA aln vs. mem for 100bp reads
0
gravatar for ropolocan
12 months ago by
ropolocan420
Canada
ropolocan420 wrote:

Hello everyone,

Which BWA algorithm is a better choice for aligning 100 bp Illumina reads? BWA aln or BWA mem? I have read that BWA mem is usually faster, and more accurate, but what is BWA aln useful for then? Thanks.

bwa • 772 views
ADD COMMENTlink modified 12 months ago by Pierre Lindenbaum110k • written 12 months ago by ropolocan420
3
gravatar for genomax
12 months ago by
genomax52k
United States
genomax52k wrote:

When and why is bwa aln better then bwa mem?
and BWA-MEM Vs BWA-ALN (check blog link in @Goutham's comment)

ADD COMMENTlink modified 12 months ago • written 12 months ago by genomax52k

Thank you so much, @genomoax!

ADD REPLYlink written 11 months ago by ropolocan420
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