Question: Dataset normalised to TPM (GSE85066)
gravatar for Vania
2.6 years ago by
Vania10 wrote:

Hello dear Biostars!

I am a newbie currently working with the dataset GSE85066, the author provides RNA-Seq data normalised to TPM (all_samples_bulk). The file contains the TPM values of 60575 genes in 9 different cell lines. I want to perform a differentially expression analysis but I have no idea how to start working with this info. Can someone help me out? Every comment will be very appreciated.

deg rstudio rna-seq tpm R • 943 views
ADD COMMENTlink modified 2.6 years ago by h.mon29k • written 2.6 years ago by Vania10
gravatar for h.mon
2.6 years ago by
h.mon29k wrote:

See Q: TPM to logFC and pvalues.

ADD COMMENTlink written 2.6 years ago by h.mon29k
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