Question: Kallisto run error
0
gravatar for shoujun.gu
3 months ago by
shoujun.gu270
Rockville/MD
shoujun.gu270 wrote:

I tried to use kallisto to align and quant my RNA-Seq data after built kallisto index, i tried to quant my data by typing:

kallisto quant -i $REF -o kal1 $R1 $R2

And I got an error:

[quant] finding pseudoalignments for the reads ...terminate called after throwing an instance of 'std::system_error'
  what():  Enable multithreading to use std::thread: Operation not permitted
Aborted (core dumped)

Could someone help me to solve this error?

I'm using kallisto 0.43.1 on Ubuntu 16.04.2 LTS. Thanks!

rna-seq kallisto alignment • 344 views
ADD COMMENTlink modified 3 months ago • written 3 months ago by shoujun.gu270
0
gravatar for shoujun.gu
3 months ago by
shoujun.gu270
Rockville/MD
shoujun.gu270 wrote:

after some google, i found it's a compiling problem. My kallisto was installed from brew. After I remove the old version, and directly installed from github, problem solved.

ADD COMMENTlink written 3 months ago by shoujun.gu270
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