Question: What do outlined reads in IGV represent?
0
gravatar for jsneaththompson
21 months ago by
jsneaththompson70 wrote:

I've been looking at some of my NGS data in IGV, and I've found some reads that aren't given a block colour, but instead are outlined in blue. I can't seem to find an answer in the IGV docs, does anyone know what this colour scheme signifies?

I've attached a link to a picture by way of example

igv next-gen alignment • 674 views
ADD COMMENTlink modified 21 months ago by Vijay Lakhujani4.1k • written 21 months ago by jsneaththompson70
1
gravatar for Vijay Lakhujani
21 months ago by
Vijay Lakhujani4.1k
India
Vijay Lakhujani4.1k wrote:

A black outline indicates that the selected read has no mate. Source here

ADD COMMENTlink written 21 months ago by Vijay Lakhujani4.1k
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