Question: Using needle command with no output to the terminal
1
gravatar for Jacob
20 months ago by
Jacob10
Jacob10 wrote:

I'm am using the needle command and would just like there to be no output to the terminal

For example this is what I run

needle -asequence seq1.fna -bsequence seq2.fna -gapopen 0 -gapextend 2 -outfile file.needle          
Needleman-Wunsch global alignment of two sequences

And I would just like the line Needleman-Wunsch global alignment of two sequences to not print.

emboss needle silent • 625 views
ADD COMMENTlink modified 20 months ago by Charles Plessy2.6k • written 20 months ago by Jacob10
2
gravatar for Charles Plessy
20 months ago by
Charles Plessy2.6k
Japan
Charles Plessy2.6k wrote:

The -auto option just does that. Quoting from the manual:

The -auto qualifier will turn off any prompting of the user. It will try to run the program with all the default settings that are defined in the ACD file. If a parameter does not have a default value and it is flagged as required, the program will stop and produce an error message.

ADD COMMENTlink written 20 months ago by Charles Plessy2.6k
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