Question: Count error rate of sam file
gravatar for jianzheng934963534
19 months ago by
jianzheng93496353410 wrote:

Hi I have aligned the fastq file to the reference genome and got a sam file. I know use "samtools stats" can get "error rate" of the sam file.

Is there any document shows how the error rate is calculated from the sam file? (since I want to seperately calculate the error rate of every read in the sam file instead of the average of the whole file)


ADD COMMENTlink modified 19 months ago by Biostar ♦♦ 20 • written 19 months ago by jianzheng93496353410
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