Question: Count error rate of sam file
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gravatar for jianzheng934963534
2.1 years ago by
jianzheng93496353410 wrote:

Hi I have aligned the fastq file to the reference genome and got a sam file. I know use "samtools stats" can get "error rate" of the sam file.

Is there any document shows how the error rate is calculated from the sam file? (since I want to seperately calculate the error rate of every read in the sam file instead of the average of the whole file)

Thanks!

ADD COMMENTlink modified 2.1 years ago by Biostar ♦♦ 20 • written 2.1 years ago by jianzheng93496353410
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