Entering edit mode
6.7 years ago
Heraud
•
0
Hi, I am doing a bacterial pangenomic analysis comparing different strains.
I used Vegan package in R to plot the pangenome accumulation curve:
library(vegan)
specaccum(bin-matrix,"random",permutations=100)
But, I dont know how to do the core genome accumulation curve.
I will be grateful if anyone offer some advice to solve this problem.
Thanks for your help!