Question: Segmentation fault error with hera
1
gravatar for pauly.rini
2.6 years ago by
pauly.rini10
United States
pauly.rini10 wrote:

Hi, I get an error while running hera, any thoughts?

/var/spool/pbs/mom_priv/jobs/783682.pbs02.SC: line 11: 117890 Segmentation fault      /hera/build/hera quant -i /Controls_CG_samples/hera/index /Controls_CG_samples/cms_R1_001.fastq /Controls_CG_samples/cms_R2_001.fastq -o /Controls_CG_samples/hera_output -t 16

I am running by hera configure 2.0, on a pbs cluster system with x86_64-redhat-linux.

Thanks for your help, Rini

rna-seq tool hera • 1.0k views
ADD COMMENTlink modified 2.6 years ago by sonpham570 • written 2.6 years ago by pauly.rini10
1

Include information about your OS, where and how you obtained hera and the version you are running. That generally helps developers debug issues.

ADD REPLYlink written 2.6 years ago by genomax78k

Thanks! Added. Rini

ADD REPLYlink written 2.6 years ago by pauly.rini10
2
gravatar for sonpham
2.6 years ago by
sonpham570
sonpham570 wrote:

Thanks Rini for the bug report. Please pull the new code from GitHub and rebuild hera. We identified the bug and have fixed it. Please let us know if it resolves the problem!

BioTuring Algorithm Team

ADD COMMENTlink written 2.6 years ago by sonpham570
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