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How to find the different expression of lncRNA from Expression profiling by array?
use “limma”or other else?
How to find the different expression of lncRNA from Expression profiling by array?
use “limma”or other else?
If you have the expression values of LncRNA of your interests across different conditions, you can apply any method that is been used for differential expression analysis. As you have already said, "Limma" would be a good choice
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Do you have the LncRNA expression levels from your expression profiling array ?
it is from GEO....
what about ballgown? when I use ballgown, I can not add genename to the my output csv?how to solve it?