Im runinng a ped file with 9 families for linkage analysis in Merlin (nlp, pairs). in the anslysis results file for each Chr Im getting the title : "Phenotype: condition [ALL] (2 families)"
It seems that only 2 families are included in the analysis , any ideas what is the problem here? (I revised the ped file, and pedstats shows the correct number)
Thanks and regards!