Question: merlin - wrong/missing families in linkage analysis
0
gravatar for shaytzur
2.1 years ago by
shaytzur0
shaytzur0 wrote:

Hello,

Im runinng a ped file with 9 families for linkage analysis in Merlin (nlp, pairs). in the anslysis results file for each Chr Im getting the title : "Phenotype: condition [ALL] (2 families)"

It seems that only 2 families are included in the analysis , any ideas what is the problem here? (I revised the ped file, and pedstats shows the correct number)

Thanks and regards!

snp • 686 views
ADD COMMENTlink written 2.1 years ago by shaytzur0

Try to spot the differences between one of the families that are analysed and one of those that are not. Maybe you can select the smallest and show the files here. I usually had no problems with merlin.

ADD REPLYlink written 2.1 years ago by Fabio Marroni2.3k
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